Package: pureseqtmr
Title: Predict Transmembrane Protein Topology
Version: 1.4.2
Authors@R: c(
    person("Richèl J.C.", "Bilderbeek", email = "rjcbilderbeek@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-1107-7049")))
Description: Proteins reside in either the cell plasma or in the cell
        membrane. A membrane protein goes through the membrane at least
        once. Given the amino acid sequence of a membrane protein, the
        tool 'PureseqTM'
        (<https://github.com/PureseqTM/pureseqTM_package>, as described
        in "Efficient And Accurate Prediction Of Transmembrane Topology
        From Amino acid sequence only.", Wang, Qing, et al (2019),
        <doi:10.1101/627307>), can predict the topology of a membrane
        protein. This package allows one to use 'PureseqTM' from R.
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Depends: R (>= 3.5.0)
Imports: data.table, devtools, dplyr, ggplot2, Peptides, plyr,
        rappdirs, readr, stringr, tibble, Rcpp
Suggests: testthat, knitr, markdown, rmarkdown, profvis
URL: https://github.com/richelbilderbeek/pureseqtmr/
BugReports: https://github.com/richelbilderbeek/pureseqtmr/
VignetteBuilder: knitr
SystemRequirements: PureseqTM
        (https://github.com/PureseqTM/pureseqTM_package)
LinkingTo: Rcpp
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libfribidi-dev git make libharfbuzz-dev libgit2-dev libicu-dev
        libjpeg-dev libpng-dev libtiff-dev libuv1-dev libwebp-dev
        libxml2-dev libssl-dev libx11-dev zlib1g-dev
Repository: https://richelbilderbeek.r-universe.dev
Date/Publication: 2026-07-02 15:39:44 UTC
RemoteUrl: https://github.com/richelbilderbeek/pureseqtmr
RemoteRef: HEAD
RemoteSha: e9573bce02095e58ae40571bb0c7d118185ff187
NeedsCompilation: yes
Packaged: 2026-07-02 17:41:54 UTC; root
Author: Richèl J.C. Bilderbeek [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-1107-7049>)
Maintainer: Richèl J.C. Bilderbeek <rjcbilderbeek@gmail.com>